Marko Djukanovi\'c, Nikola Balaban, Christian Blum, Aleksandar Kartelj, Sa\v{s}o D\v{z}eroski, \v{Z}iga Zebec
View original ↗Build an optimized C++/Rust library for the VGLCS problem to support high-throughput molecular sequence analysis. The library should provide an interface for custom gap-penalty functions, currently lacking in standard bioinformatics packages.
Suggested repo: nanoVGLCS
"Solve complex sequence alignment problems with flexible gap constraints in O(n^2) time."
Estimated effort: 40h